PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do023024.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 220aa    MW: 24003.1 Da    PI: 7.0214
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do023024.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-1261106454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h e+Er+RRdr+N +f eLr  +P+       +++ a+ L  A+ YI +L
  Do023024.1  61 SHVEAERQRRDRLNRRFCELRAAVPTV-----SRMDRASLLSDATAYIAEL 106
                 899***********************6.....49**************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.05957106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-1560119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-1661128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-1061106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-1163112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSCEVPEQWL VAGDVLDKRD DDDEPLDDGA DNSPSPPEPH AERKSRRGRK PGPRTAGPAS  60
SHVEAERQRR DRLNRRFCEL RAAVPTVSRM DRASLLSDAT AYIAELRGRV KELETEAKTR  120
RMTGAEASQS PQHFSLEVRM VGRDAASLRL TTPAARHAQA PACLMAAIRA LDLLVQNACV  180
CRVGGPTVQD VVVDVPAAGG LLGEDYLRAA LLHRLLQESV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16671RQRRDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444643.11e-70hypothetical protein SORBIDRAFT_07g025310
TrEMBLC5YH801e-70C5YH80_SORBI; Putative uncharacterized protein Sb07g025310
STRINGSb07g025310.13e-70(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.16e-26bHLH family protein